Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 172249..172520 | Replicon | chromosome |
| Accession | NZ_CP049936 | ||
| Organism | Escherichia coli strain JL05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 172379..172482 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 172249..172520 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9V97_RS00805 | 168804..169466 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G9V97_RS00810 | 169490..170146 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| G9V97_RS00815 | 170248..170478 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G9V97_RS00820 | 170617..170991 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| G9V97_RS00825 | 170995..171867 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| G9V97_RS00830 | 171880..172221 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 172249..172520 | - | 272 | - | - | Antitoxin |
| - | 172379..172482 | + | 104 | - | - | Toxin |
| G9V97_RS00835 | 172617..173273 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| G9V97_RS00840 | 173274..173465 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G9V97_RS00845 | 173570..173806 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G9V97_RS00850 | 173924..175363 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 150235..175369 | 25134 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151780 NZ_CP049936:172379-172482 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT151780 NZ_CP049936:c172520-172249 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
