Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3511630..3511839 | Replicon | chromosome |
| Accession | NZ_CP049290 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain 08-175 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3511643..3511746 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3511630..3511839 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6324_RS16920 (G6324_16920) | 3507898..3509346 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G6324_RS16925 (G6324_16925) | 3509453..3509692 | + | 240 | WP_003859885.1 | YebV family protein | - |
| G6324_RS16930 (G6324_16930) | 3509727..3510371 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| G6324_RS16935 (G6324_16935) | 3510539..3511519 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| G6324_RS16940 (G6324_16940) | 3511565..3511762 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 3511630..3511839 | + | 210 | - | - | Antitoxin |
| - | 3511643..3511746 | - | 104 | - | - | Toxin |
| G6324_RS16945 (G6324_16945) | 3511888..3512226 | - | 339 | WP_003859787.1 | YebY family protein | - |
| G6324_RS16950 (G6324_16950) | 3512243..3513112 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| G6324_RS16955 (G6324_16955) | 3513114..3513485 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| G6324_RS16960 (G6324_16960) | 3513623..3513853 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| G6324_RS16965 (G6324_16965) | 3513965..3514615 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| G6324_RS16970 (G6324_16970) | 3514640..3515302 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151177 NZ_CP049290:c3511746-3511643 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT151177 NZ_CP049290:3511630-3511839 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
