Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014633..2014904 | Replicon | chromosome |
| Accession | NZ_CP049204 | ||
| Organism | Escherichia coli strain PapM-32-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014763..2014866 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014633..2014904 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6Z93_RS09490 | 2011188..2011850 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6Z93_RS09495 | 2011874..2012530 | - | 657 | WP_044191542.1 | carbon-nitrogen hydrolase family protein | - |
| G6Z93_RS09500 | 2012632..2012862 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6Z93_RS09505 | 2013001..2013375 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| G6Z93_RS09510 | 2013379..2014251 | + | 873 | WP_044191540.1 | copper homeostasis membrane protein CopD | - |
| G6Z93_RS09515 | 2014264..2014605 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2014633..2014904 | - | 272 | - | - | Antitoxin |
| - | 2014763..2014866 | + | 104 | - | - | Toxin |
| G6Z93_RS09520 | 2015001..2015657 | + | 657 | WP_001718411.1 | protein-serine/threonine phosphatase | - |
| G6Z93_RS09525 | 2015658..2015849 | - | 192 | WP_001313035.1 | YebW family protein | - |
| G6Z93_RS09530 | 2015954..2016190 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G6Z93_RS09535 | 2016308..2017747 | - | 1440 | WP_001718410.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151024 NZ_CP049204:2014763-2014866 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT151024 NZ_CP049204:c2014904-2014633 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
