Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2187233..2187504 | Replicon | chromosome |
| Accession | NZ_CP049201 | ||
| Organism | Escherichia coli strain PapRG-04-4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2187363..2187466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2187233..2187504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6Z99_RS10455 | 2183788..2184450 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6Z99_RS10460 | 2184474..2185130 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| G6Z99_RS10465 | 2185232..2185462 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6Z99_RS10470 | 2185601..2185975 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G6Z99_RS10475 | 2185979..2186851 | + | 873 | WP_047623971.1 | copper homeostasis membrane protein CopD | - |
| G6Z99_RS10480 | 2186864..2187205 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2187233..2187504 | - | 272 | - | - | Antitoxin |
| - | 2187363..2187466 | + | 104 | - | - | Toxin |
| G6Z99_RS10485 | 2187601..2188257 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| G6Z99_RS10490 | 2188258..2188449 | - | 192 | WP_001313035.1 | YebW family protein | - |
| G6Z99_RS10495 | 2188554..2188790 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G6Z99_RS10500 | 2188908..2190347 | - | 1440 | WP_158114772.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150988 NZ_CP049201:2187363-2187466 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT150988 NZ_CP049201:c2187504-2187233 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
