Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4628426..4628627 | Replicon | chromosome |
| Accession | NZ_CP049188 | ||
| Organism | Enterobacter hormaechei strain Y323 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4628519..4628622 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4628426..4628627 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5C52_RS21795 | 4624963..4625625 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| G5C52_RS21800 | 4625650..4626300 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| G5C52_RS21805 | 4626412..4626642 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| G5C52_RS21810 | 4626780..4627151 | + | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| G5C52_RS21815 | 4627153..4628022 | + | 870 | WP_048240589.1 | copper homeostasis membrane protein CopD | - |
| G5C52_RS21820 | 4628039..4628377 | + | 339 | WP_048240591.1 | YebY family protein | - |
| - | 4628426..4628627 | - | 202 | - | - | Antitoxin |
| G5C52_RS21825 | 4628503..4628700 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 4628519..4628622 | + | 104 | - | - | Toxin |
| G5C52_RS21830 | 4628746..4629726 | - | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| G5C52_RS21835 | 4629894..4630538 | + | 645 | WP_045337547.1 | protein-serine/threonine phosphatase | - |
| G5C52_RS21840 | 4630573..4630812 | - | 240 | WP_003859885.1 | YebV family protein | - |
| G5C52_RS21845 | 4630919..4632361 | - | 1443 | WP_072204417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150866 NZ_CP049188:4628519-4628622 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT150866 NZ_CP049188:c4628627-4628426 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
