Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3813013..3813247 | Replicon | chromosome |
| Accession | NZ_CP049171 | ||
| Organism | Shigella sonnei strain 0401930105 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3813143..3813246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3813013..3813247 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O59_RS18985 | 3809568..3810230 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6O59_RS18990 | 3810254..3810910 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O59_RS18995 | 3811012..3811242 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O59_RS19000 | 3811381..3811755 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O59_RS19005 | 3811759..3812631 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O59_RS19010 | 3812644..3812985 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3813013..3813247 | - | 235 | - | - | Antitoxin |
| - | 3813143..3813246 | + | 104 | - | - | Toxin |
| G6O59_RS19015 | 3813368..3814444 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| G6O59_RS19020 | 3814481..3814726 | - | 246 | Protein_3693 | IS1 family transposase | - |
| G6O59_RS19030 | 3816060..3816514 | - | 455 | Protein_3695 | IS1-like element IS1A family transposase | - |
| G6O59_RS19035 | 3816543..3816803 | - | 261 | WP_077447296.1 | excisionase | - |
| G6O59_RS19040 | 3816948..3818104 | + | 1157 | WP_087879964.1 | IS3-like element IS600 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 / ipaH9.8 | 3807511..3840199 | 32688 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150734 NZ_CP049171:3813143-3813246 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT150734 NZ_CP049171:c3813247-3813013 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
