Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2743263..2743534 | Replicon | chromosome |
| Accession | NZ_CP049081 | ||
| Organism | Escherichia coli strain p10A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2743301..2743404 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2743263..2743534 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6P90_RS13290 | 2740420..2741859 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G6P90_RS13295 | 2741977..2742213 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G6P90_RS13300 | 2742318..2742509 | + | 192 | WP_000457842.1 | YebW family protein | - |
| G6P90_RS13305 | 2742510..2743166 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2743263..2743534 | + | 272 | - | - | Antitoxin |
| - | 2743301..2743404 | - | 104 | - | - | Toxin |
| G6P90_RS13310 | 2743562..2743903 | - | 342 | WP_000976476.1 | YebY family protein | - |
| G6P90_RS13315 | 2743916..2744788 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| G6P90_RS13320 | 2744792..2745166 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G6P90_RS13325 | 2745305..2745535 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6P90_RS13330 | 2745637..2746293 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| G6P90_RS13335 | 2746317..2746979 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150395 NZ_CP049081:c2743404-2743301 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT150395 NZ_CP049081:2743263-2743534 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
