Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2836998..2837138 | Replicon | chromosome |
| Accession | NZ_CP049015 | ||
| Organism | Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 strain ATCC 8090 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2837000..2837103 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2836998..2837138 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4551_RS13665 | 2834134..2834727 | + | 594 | Protein_2674 | recombinase RecT | - |
| G4551_RS13670 | 2834762..2835106 | + | 345 | WP_003841644.1 | hypothetical protein | - |
| G4551_RS13675 | 2835099..2835302 | + | 204 | WP_003841645.1 | hypothetical protein | - |
| G4551_RS13680 | 2835289..2835531 | + | 243 | WP_003841647.1 | DUF4060 family protein | - |
| G4551_RS13685 | 2835596..2835868 | + | 273 | WP_003841650.1 | excisionase | - |
| G4551_RS13690 | 2835837..2836922 | + | 1086 | WP_003841651.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2836998..2837138 | + | 141 | - | - | Antitoxin |
| - | 2837000..2837103 | - | 104 | - | - | Toxin |
| G4551_RS13695 | 2837259..2837597 | - | 339 | WP_003034934.1 | YebY family protein | - |
| G4551_RS13700 | 2837618..2838490 | - | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| G4551_RS13705 | 2838494..2838868 | - | 375 | WP_003841654.1 | CopC domain-containing protein YobA | - |
| G4551_RS13710 | 2839012..2839242 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| G4551_RS13715 | 2839349..2840005 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| G4551_RS13720 | 2840029..2840691 | + | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2792828..2904472 | 111644 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150282 NZ_CP049015:c2837103-2837000 [Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT150282 NZ_CP049015:2836998-2837138 [Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
