Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2155115..2155946 | Replicon | chromosome |
| Accession | NZ_CP048920 | ||
| Organism | Escherichia coli strain SCU-101 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1P968 |
| Locus tag | G4235_RS10415 | Protein ID | WP_000854814.1 |
| Coordinates | 2155115..2155489 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | G4235_RS10420 | Protein ID | WP_001560600.1 |
| Coordinates | 2155578..2155946 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4235_RS10375 | 2150511..2151677 | + | 1167 | WP_001296209.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
| G4235_RS10380 | 2151796..2152269 | + | 474 | WP_001560602.1 | DNA gyrase inhibitor SbmC | - |
| G4235_RS10385 | 2152467..2153525 | + | 1059 | WP_001560601.1 | FUSC family protein | - |
| G4235_RS10390 | 2153697..2154026 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| G4235_RS10395 | 2154127..2154309 | - | 183 | WP_001016348.1 | hypothetical protein | - |
| G4235_RS10400 | 2154336..2154509 | + | 174 | WP_032082634.1 | transposase domain-containing protein | - |
| G4235_RS10405 | 2154798..2154911 | - | 114 | WP_001161660.1 | DUF957 domain-containing protein | - |
| G4235_RS10410 | 2154924..2155118 | - | 195 | WP_000988600.1 | hypothetical protein | - |
| G4235_RS10415 | 2155115..2155489 | - | 375 | WP_000854814.1 | type IV toxin-antitoxin system toxin CbtA | Toxin |
| G4235_RS10420 | 2155578..2155946 | - | 369 | WP_001560600.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| G4235_RS10425 | 2156020..2156241 | - | 222 | WP_000692315.1 | DUF987 domain-containing protein | - |
| G4235_RS10430 | 2156304..2156780 | - | 477 | WP_001186170.1 | RadC family protein | - |
| G4235_RS10435 | 2156796..2157269 | - | 474 | WP_001313575.1 | antirestriction protein | - |
| G4235_RS10440 | 2157532..2158353 | - | 822 | WP_021561125.1 | DUF945 domain-containing protein | - |
| G4235_RS10445 | 2158574..2158984 | - | 411 | WP_000846704.1 | hypothetical protein | - |
| G4235_RS10450 | 2159000..2159482 | - | 483 | WP_001560596.1 | hypothetical protein | - |
| G4235_RS10455 | 2159814..2160884 | - | 1071 | WP_000102631.1 | patatin-like phospholipase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13898.94 Da Isoelectric Point: 7.8522
>T150203 WP_000854814.1 NZ_CP048920:c2155489-2155115 [Escherichia coli]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T150203 NZ_CP064405:843291-843719 [Mycobacterium tuberculosis variant bovis BCG]
ATGTTCCTTCTCGACGCCAACGTGCTGCTGGCTGCACACCGCGGTGACCACCCGAATCACCGAACCGTCCGCCCCTGGTT
CGATCGACTGCTCGCGGCTGACGACCCCTTCACAGTGCCGAACCTGGTATGGGCGTCGTTCCTCCGGCTGGCAACGAATC
GACGCATCTTCGAGATTCCGTCACCGCGAGCAGAGGCATTCGCATTCGTCGAAGCCGTCACCGCCCAGCCCCATCACCTT
CCGACGAACCCCGGTCCCAGACACCTGGTGCTGCTGCGAAAACTCTGCGACGAGGCCGACGCATCGGGCGACTTGATACC
TGACGCGGTACTCGCGGCCATAGCAGTGGGGCATCACTGCGCCGTGGTGAGCCTGGACAGGGATTTCGCCCGGTTTGCCT
CGGTGCGCCACATTCGCCCGCCGCTCTAG
ATGTTCCTTCTCGACGCCAACGTGCTGCTGGCTGCACACCGCGGTGACCACCCGAATCACCGAACCGTCCGCCCCTGGTT
CGATCGACTGCTCGCGGCTGACGACCCCTTCACAGTGCCGAACCTGGTATGGGCGTCGTTCCTCCGGCTGGCAACGAATC
GACGCATCTTCGAGATTCCGTCACCGCGAGCAGAGGCATTCGCATTCGTCGAAGCCGTCACCGCCCAGCCCCATCACCTT
CCGACGAACCCCGGTCCCAGACACCTGGTGCTGCTGCGAAAACTCTGCGACGAGGCCGACGCATCGGGCGACTTGATACC
TGACGCGGTACTCGCGGCCATAGCAGTGGGGCATCACTGCGCCGTGGTGAGCCTGGACAGGGATTTCGCCCGGTTTGCCT
CGGTGCGCCACATTCGCCCGCCGCTCTAG
Antitoxin
Download Length: 123 a.a. Molecular weight: 13503.31 Da Isoelectric Point: 5.9526
>AT150203 WP_001560600.1 NZ_CP048920:c2155946-2155578 [Escherichia coli]
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLANRAGIRGLSSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLACEADTLSSCGYVYLAVYPTPEMKN
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLANRAGIRGLSSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLACEADTLSSCGYVYLAVYPTPEMKN
Download Length: 369 bp
>AT150203 NZ_CP064405:843010-843267 [Mycobacterium tuberculosis variant bovis BCG]
ATGCGCACCACGGTGTCAATCTCCGATGAAATACTCGCTGCCGCCAAACGCCGGGCCCGCGAGCGTGGTCAATCGCTGGG
CGCTGTGATCGAGGACGCCCTTCGGCGGGAGTTCGCCGCCGCCCACGTCGGCGGCGCCCGCCCGACCGTCCCGGTTTTCG
ACGGCGGCACCGGTCCGCGGCGAGGCATCGACCTGACCTCGAATAGAGCGTTGTCCGAAGTGCTCGACGAGGGCCTGGAA
CTGAACTCCCGGAAGTAA
ATGCGCACCACGGTGTCAATCTCCGATGAAATACTCGCTGCCGCCAAACGCCGGGCCCGCGAGCGTGGTCAATCGCTGGG
CGCTGTGATCGAGGACGCCCTTCGGCGGGAGTTCGCCGCCGCCCACGTCGGCGGCGCCCGCCCGACCGTCCCGGTTTTCG
ACGGCGGCACCGGTCCGCGGCGAGGCATCGACCTGACCTCGAATAGAGCGTTGTCCGAAGTGCTCGACGAGGGCCTGGAA
CTGAACTCCCGGAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|