Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2170841..2171109 | Replicon | chromosome |
| Accession | NZ_CP048647 | ||
| Organism | Escherichia coli strain GW-AmxH19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2170969..2171071 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2170841..2171109 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3273_RS10090 | 2167395..2168057 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G3273_RS10095 | 2168080..2168736 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| G3273_RS10100 | 2168838..2169068 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G3273_RS10105 | 2169207..2169581 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G3273_RS10110 | 2169585..2170457 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| G3273_RS10115 | 2170470..2170811 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 2170841..2171109 | - | 269 | - | - | Antitoxin |
| - | 2170969..2171071 | + | 103 | - | - | Toxin |
| G3273_RS10120 | 2171206..2171862 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| G3273_RS10125 | 2171863..2172054 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G3273_RS10130 | 2172159..2172395 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G3273_RS10135 | 2172513..2173952 | - | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T149819 NZ_CP048647:2170969-2171071 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT149819 NZ_CP048647:c2171109-2170841 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
