Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4333255..4333398 | Replicon | chromosome |
| Accession | NZ_CP048382 | ||
| Organism | Citrobacter freundii strain 62 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4333260..4333363 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4333255..4333398 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS04_RS20805 | 4330445..4331833 | + | 1389 | WP_203237417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GZS04_RS20810 | 4331934..4332170 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| GZS04_RS20815 | 4332273..4332464 | + | 192 | WP_003841978.1 | YebW family protein | - |
| GZS04_RS20820 | 4332465..4333106 | - | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| - | 4333255..4333398 | + | 144 | - | - | Antitoxin |
| - | 4333260..4333363 | - | 104 | - | - | Toxin |
| GZS04_RS20825 | 4333519..4333857 | - | 339 | WP_003034934.1 | YebY family protein | - |
| GZS04_RS20830 | 4333878..4334750 | - | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| GZS04_RS20835 | 4334754..4335128 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| GZS04_RS20840 | 4335272..4335502 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| GZS04_RS20845 | 4335609..4336265 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| GZS04_RS20850 | 4336289..4336951 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149314 NZ_CP048382:c4333363-4333260 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT149314 NZ_CP048382:4333255-4333398 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
