Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995373..1995644 | Replicon | chromosome |
| Accession | NZ_CP048330 | ||
| Organism | Escherichia coli strain 10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995503..1995606 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995373..1995644 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS13_RS09545 | 1991928..1992590 | - | 663 | WP_032297904.1 | exodeoxyribonuclease X | - |
| GZS13_RS09550 | 1992614..1993270 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| GZS13_RS09555 | 1993372..1993602 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GZS13_RS09560 | 1993741..1994115 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| GZS13_RS09565 | 1994119..1994991 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| GZS13_RS09570 | 1995004..1995345 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1995373..1995644 | - | 272 | - | - | Antitoxin |
| - | 1995503..1995606 | + | 104 | - | - | Toxin |
| GZS13_RS09575 | 1995741..1996397 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| GZS13_RS09580 | 1996398..1996589 | - | 192 | WP_001338167.1 | YebW family protein | - |
| GZS13_RS09585 | 1996694..1996930 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| GZS13_RS09590 | 1997048..1998487 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1971697..2011482 | 39785 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149077 NZ_CP048330:1995503-1995606 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT149077 NZ_CP048330:c1995644-1995373 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
