Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2916887..2917088 | Replicon | chromosome |
| Accession | NZ_CP047965 | ||
| Organism | Enterobacter hormaechei strain 189 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2916892..2916995 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2916887..2917088 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUY47_RS13970 | 2913133..2914596 | + | 1464 | WP_017693253.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GUY47_RS13975 | 2914702..2914941 | + | 240 | WP_003859885.1 | YebV family protein | - |
| GUY47_RS13980 | 2914976..2915620 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| GUY47_RS13985 | 2915788..2916768 | + | 981 | WP_032653972.1 | VirK/YbjX family protein | - |
| GUY47_RS13990 | 2916814..2917011 | + | 198 | WP_032653975.1 | hypothetical protein | - |
| - | 2916887..2917088 | + | 202 | - | - | Antitoxin |
| - | 2916892..2916995 | - | 104 | - | - | Toxin |
| GUY47_RS13995 | 2917137..2917475 | - | 339 | WP_003859787.1 | YebY family protein | - |
| GUY47_RS14000 | 2917492..2918361 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| GUY47_RS14005 | 2918363..2918734 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| GUY47_RS14010 | 2918872..2919102 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GUY47_RS14015 | 2919214..2919864 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| GUY47_RS14020 | 2919889..2920551 | + | 663 | WP_032653982.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T148599 NZ_CP047965:c2916995-2916892 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT148599 NZ_CP047965:2916887-2917088 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
