Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3625570..3625715 | Replicon | chromosome |
| Accession | NZ_CP047648 | ||
| Organism | Klebsiella pneumoniae strain 156070 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3625577..3625679 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3625570..3625715 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTK58_RS17890 | 3621102..3622535 | + | 1434 | WP_160192556.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GTK58_RS17895 | 3622651..3622890 | + | 240 | WP_002911393.1 | YebV family protein | - |
| GTK58_RS17900 | 3622988..3623179 | + | 192 | WP_002911395.1 | YebW family protein | - |
| GTK58_RS17905 | 3623176..3623829 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| GTK58_RS17910 | 3623986..3624954 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| GTK58_RS17915 | 3625059..3625202 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3625570..3625715 | + | 146 | - | - | Antitoxin |
| - | 3625577..3625679 | - | 103 | - | - | Toxin |
| GTK58_RS17920 | 3625838..3626176 | - | 339 | WP_002911404.1 | YebY family protein | - |
| GTK58_RS17925 | 3626193..3627062 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| GTK58_RS17930 | 3627066..3627440 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GTK58_RS17935 | 3627553..3627783 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GTK58_RS17940 | 3627862..3628521 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GTK58_RS17945 | 3628525..3630585 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T147033 NZ_CP047648:c3625679-3625577 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT147033 NZ_CP047648:3625570-3625715 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
