Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2088335..2088503 | Replicon | chromosome |
| Accession | NZ_CP047604 | ||
| Organism | Klebsiella sp. MPUS7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2088393..2088496 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2088335..2088503 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUC22_RS09825 | 2083462..2085522 | + | 2061 | WP_064342867.1 | oligopeptidase B | - |
| GUC22_RS09830 | 2085529..2086188 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| GUC22_RS09835 | 2086267..2086497 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| GUC22_RS09840 | 2086633..2087007 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| GUC22_RS09845 | 2087012..2087881 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| GUC22_RS09850 | 2087898..2088236 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2088335..2088503 | - | 169 | - | - | Antitoxin |
| - | 2088393..2088496 | + | 104 | - | - | Toxin |
| GUC22_RS09855 | 2088621..2089580 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| GUC22_RS09860 | 2089595..2091925 | - | 2331 | WP_049130963.1 | fimbrial biogenesis outer membrane usher protein | - |
| GUC22_RS09865 | 2091928..2092692 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| GUC22_RS09870 | 2092711..2093229 | - | 519 | WP_032711055.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146898 NZ_CP047604:2088393-2088496 [Klebsiella sp. MPUS7]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT146898 NZ_CP047604:c2088503-2088335 [Klebsiella sp. MPUS7]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
