Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 956333..956601 | Replicon | chromosome |
| Accession | NZ_CP047600 | ||
| Organism | Escherichia coli O84:H7 strain Trh52 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 956371..956473 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 956333..956601 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUK18_RS04755 | 953490..954929 | + | 1440 | WP_203164434.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GUK18_RS04760 | 955047..955283 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GUK18_RS04765 | 955388..955579 | + | 192 | WP_001317886.1 | YebW family protein | - |
| GUK18_RS04770 | 955580..956236 | - | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| - | 956333..956601 | + | 269 | - | - | Antitoxin |
| - | 956371..956473 | - | 103 | - | - | Toxin |
| GUK18_RS04775 | 956631..956972 | - | 342 | WP_024223804.1 | YebY family protein | - |
| GUK18_RS04780 | 956985..957857 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| GUK18_RS04785 | 957861..958235 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GUK18_RS04790 | 958374..958604 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GUK18_RS04795 | 958706..959362 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| GUK18_RS04800 | 959385..960047 | + | 663 | WP_203164435.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T146867 NZ_CP047600:c956473-956371 [Escherichia coli O84:H7]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT146867 NZ_CP047600:956333-956601 [Escherichia coli O84:H7]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCGGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCGGGTGAAAGAACTGAGGCGGTTTTTT
