Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2054002..2054273 | Replicon | chromosome |
| Accession | NZ_CP047405 | ||
| Organism | Escherichia coli strain MS6193 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2054040..2054143 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2054002..2054273 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS6193_RS09935 | 2051159..2052598 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MS6193_RS09940 | 2052716..2052952 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MS6193_RS09945 | 2053057..2053248 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MS6193_RS09950 | 2053249..2053905 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 2054002..2054273 | + | 272 | - | - | Antitoxin |
| - | 2054040..2054143 | - | 104 | - | - | Toxin |
| MS6193_RS09955 | 2054301..2054642 | - | 342 | WP_000976492.1 | YebY family protein | - |
| MS6193_RS09960 | 2054655..2055527 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| MS6193_RS09965 | 2055531..2055905 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| MS6193_RS09970 | 2056044..2056274 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MS6193_RS09975 | 2056376..2057032 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| MS6193_RS09980 | 2057056..2057718 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146168 NZ_CP047405:c2054143-2054040 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT146168 NZ_CP047405:2054002-2054273 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
