Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3823275..3823546 | Replicon | chromosome |
| Accession | NZ_CP047127 | ||
| Organism | Escherichia coli K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3823405..3823508 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3823275..3823546 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRF62_RS18210 | 3819830..3820492 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GRF62_RS18215 | 3820516..3821172 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GRF62_RS18220 | 3821274..3821504 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GRF62_RS18225 | 3821643..3822017 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GRF62_RS18230 | 3822021..3822893 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| GRF62_RS18235 | 3822906..3823247 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3823275..3823546 | - | 272 | - | - | Antitoxin |
| - | 3823405..3823508 | + | 104 | - | - | Toxin |
| GRF62_RS18240 | 3823643..3824299 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GRF62_RS18245 | 3824300..3824491 | - | 192 | WP_000457842.1 | YebW family protein | - |
| GRF62_RS18250 | 3824596..3824832 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GRF62_RS18255 | 3824950..3826389 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T145459 NZ_CP047127:3823405-3823508 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT145459 NZ_CP047127:c3823546-3823275 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
