Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafN(antitoxin) |
| Location | 2807852..2808417 | Replicon | chromosome |
| Accession | NZ_CP046808 | ||
| Organism | Vibrio parahaemolyticus strain 2013V-1146 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A249W588 |
| Locus tag | GP469_RS13950 | Protein ID | WP_023667331.1 |
| Coordinates | 2808130..2808417 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | GP469_RS13945 | Protein ID | WP_023667330.1 |
| Coordinates | 2807852..2808133 (+) | Length | 94 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GP469_RS13900 | 2803562..2804146 | + | 585 | WP_029850554.1 | hypothetical protein | - |
| GP469_RS13905 | 2804161..2804253 | + | 93 | WP_079748814.1 | DUF3265 domain-containing protein | - |
| GP469_RS13910 | 2804300..2804656 | + | 357 | WP_021485171.1 | hypothetical protein | - |
| GP469_RS13915 | 2804680..2804769 | + | 90 | WP_079748783.1 | DUF3265 domain-containing protein | - |
| GP469_RS13920 | 2804797..2805378 | + | 582 | WP_023667325.1 | putative mannitol operon repressor domain protein | - |
| GP469_RS13930 | 2806595..2807011 | + | 417 | WP_023667328.1 | VOC family protein | - |
| GP469_RS13935 | 2807045..2807122 | + | 78 | WP_079748784.1 | DUF3265 domain-containing protein | - |
| GP469_RS13940 | 2807151..2807642 | + | 492 | WP_029850189.1 | hypothetical protein | - |
| GP469_RS13945 | 2807852..2808133 | + | 282 | WP_023667330.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| GP469_RS13950 | 2808130..2808417 | + | 288 | WP_023667331.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GP469_RS13955 | 2808420..2808536 | + | 117 | WP_078532102.1 | DUF3265 domain-containing protein | - |
| GP469_RS13965 | 2809017..2809148 | + | 132 | WP_005494795.1 | DUF3265 domain-containing protein | - |
| GP469_RS13970 | 2810159..2810281 | + | 123 | WP_079748760.1 | DUF3265 domain-containing protein | - |
| GP469_RS13975 | 2810300..2810767 | + | 468 | WP_005494803.1 | GNAT family N-acetyltransferase | - |
| GP469_RS13980 | 2810767..2810895 | + | 129 | WP_161612914.1 | DUF3265 domain-containing protein | - |
| GP469_RS13985 | 2811259..2811351 | + | 93 | WP_005494807.1 | DUF3265 domain-containing protein | - |
| GP469_RS13990 | 2811453..2811662 | + | 210 | WP_025506672.1 | DUF3955 domain-containing protein | - |
| GP469_RS14000 | 2812336..2812425 | + | 90 | WP_078235921.1 | DUF3265 domain-containing protein | - |
| GP469_RS14005 | 2812459..2812911 | + | 453 | WP_005494814.1 | hypothetical protein | - |
| GP469_RS14010 | 2812947..2813039 | + | 93 | WP_078535095.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2791956..2897189 | 105233 | |
| - | inside | Integron | - | - | 2792480..2896508 | 104028 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 10949.53 Da Isoelectric Point: 5.0980
>T144967 WP_023667331.1 NZ_CP046808:2808130-2808417 [Vibrio parahaemolyticus]
MKVVWSPLALQKLGDAAEFISLDNPSAAEKWVNDVFDKTESLGSMPEMGRFVPEIPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQILTEDDV
MKVVWSPLALQKLGDAAEFISLDNPSAAEKWVNDVFDKTESLGSMPEMGRFVPEIPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQILTEDDV
Download Length: 288 bp
>T144967 NZ_CP062248:c242726-242448 [Escherichia coli]
ATGATTCAAAGGGATATTGAATACTCGGGACAATATTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA
ATGATTCAAAGGGATATTGAATACTCGGGACAATATTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10427.94 Da Isoelectric Point: 5.1991
>AT144967 WP_023667330.1 NZ_CP046808:2807852-2808133 [Vibrio parahaemolyticus]
MSRIHFDQDIQPLSEFRAGVASYIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLASGLGVSN
EEARAEVLGRIKK
MSRIHFDQDIQPLSEFRAGVASYIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLASGLGVSN
EEARAEVLGRIKK
Download Length: 282 bp
>AT144967 NZ_CP062248:c242989-242729 [Escherichia coli]
ATGGCTGCTAACGCGTTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCAGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCATTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA
ATGGCTGCTAACGCGTTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCAGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCATTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|