Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2852664..2852845 | Replicon | chromosome |
| Accession | NZ_CP046446 | ||
| Organism | Leclercia sp. J807 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2852676..2852778 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2852664..2852845 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNG26_RS13635 | 2848668..2850110 | + | 1443 | WP_156239117.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GNG26_RS13640 | 2850214..2850453 | + | 240 | WP_103181101.1 | YebV family protein | - |
| GNG26_RS13645 | 2850558..2850749 | + | 192 | WP_039030805.1 | YebW family protein | - |
| GNG26_RS13650 | 2850750..2851394 | - | 645 | WP_156239119.1 | protein-serine/threonine phosphatase | - |
| GNG26_RS13655 | 2851653..2852519 | + | 867 | WP_156240193.1 | VirK/YbjX family protein | - |
| - | 2852664..2852845 | + | 182 | - | - | Antitoxin |
| - | 2852676..2852778 | - | 103 | - | - | Toxin |
| GNG26_RS13660 | 2852919..2853257 | - | 339 | WP_103822368.1 | YebY family protein | - |
| GNG26_RS13665 | 2853272..2854144 | - | 873 | WP_156239121.1 | copper homeostasis membrane protein CopD | - |
| GNG26_RS13670 | 2854146..2854511 | - | 366 | WP_156239123.1 | CopC domain-containing protein YobA | - |
| GNG26_RS13675 | 2854648..2854878 | + | 231 | WP_103180048.1 | DNA polymerase III subunit theta | - |
| GNG26_RS13680 | 2854986..2855642 | + | 657 | WP_156239125.1 | carbon-nitrogen hydrolase family protein | - |
| GNG26_RS13685 | 2855667..2856329 | + | 663 | WP_103822371.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T144302 NZ_CP046446:c2852778-2852676 [Leclercia sp. J807]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 182 bp
>AT144302 NZ_CP046446:2852664-2852845 [Leclercia sp. J807]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAA
AAGTGGCCTGAAAAAAAGCGTG
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAA
AAGTGGCCTGAAAAAAAGCGTG
