Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3392603..3392767 | Replicon | chromosome |
| Accession | NZ_CP046115 | ||
| Organism | Klebsiella oxytoca strain P620 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3392606..3392709 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3392603..3392767 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJ746_RS15770 | 3387868..3388383 | + | 516 | WP_154681037.1 | spore coat U domain-containing protein | - |
| GJ746_RS15775 | 3388402..3389166 | + | 765 | WP_154681038.1 | molecular chaperone | - |
| GJ746_RS15780 | 3389169..3391511 | + | 2343 | WP_154681039.1 | fimbrial biogenesis outer membrane usher protein | - |
| GJ746_RS15785 | 3391514..3392473 | + | 960 | WP_154681040.1 | spore coat U domain-containing protein | - |
| GJ746_RS15790 | 3392534..3392698 | + | 165 | WP_154681041.1 | hypothetical protein | - |
| - | 3392603..3392767 | + | 165 | - | - | Antitoxin |
| - | 3392606..3392709 | - | 104 | - | - | Toxin |
| GJ746_RS15795 | 3392864..3393202 | - | 339 | WP_195908740.1 | YebY family protein | - |
| GJ746_RS15800 | 3393219..3394088 | - | 870 | WP_154681043.1 | copper homeostasis membrane protein CopD | - |
| GJ746_RS15805 | 3394093..3394467 | - | 375 | WP_154681044.1 | CopC domain-containing protein YobA | - |
| GJ746_RS15810 | 3394603..3394833 | + | 231 | WP_154681045.1 | DNA polymerase III subunit theta | - |
| GJ746_RS15815 | 3394912..3395571 | + | 660 | WP_154681046.1 | exodeoxyribonuclease X | - |
| GJ746_RS15820 | 3395578..3397638 | - | 2061 | WP_154681047.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T143641 NZ_CP046115:c3392709-3392606 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 165 bp
>AT143641 NZ_CP046115:3392603-3392767 [Klebsiella oxytoca]
GATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTGGACG
AATAA
GATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTGGACG
AATAA
