Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2090148..2090419 | Replicon | chromosome |
| Accession | NZ_CP046003 | ||
| Organism | Escherichia coli strain 1916D6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2090278..2090381 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2090148..2090419 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJD94_RS10890 | 2086703..2087365 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| GJD94_RS10895 | 2087389..2088045 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GJD94_RS10900 | 2088147..2088377 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GJD94_RS10905 | 2088516..2088890 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GJD94_RS10910 | 2088894..2089766 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| GJD94_RS10915 | 2089779..2090120 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2090148..2090419 | - | 272 | - | - | Antitoxin |
| - | 2090278..2090381 | + | 104 | - | - | Toxin |
| GJD94_RS10920 | 2090516..2091172 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| GJD94_RS10925 | 2091173..2091364 | - | 192 | WP_001338167.1 | YebW family protein | - |
| GJD94_RS10930 | 2091469..2091705 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| GJD94_RS10935 | 2091823..2093262 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T143302 NZ_CP046003:2090278-2090381 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT143302 NZ_CP046003:c2090419-2090148 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
