Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1837957..1838228 | Replicon | chromosome |
| Accession | NZ_CP045977 | ||
| Organism | Escherichia coli strain INSC1002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1837995..1838098 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1837957..1838228 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GI529_RS09080 | 1835114..1836553 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GI529_RS09085 | 1836671..1836907 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GI529_RS09090 | 1837012..1837203 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GI529_RS09095 | 1837204..1837860 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1837957..1838228 | + | 272 | - | - | Antitoxin |
| - | 1837995..1838098 | - | 104 | - | - | Toxin |
| GI529_RS09100 | 1838255..1838596 | - | 342 | WP_000976472.1 | YebY family protein | - |
| GI529_RS09105 | 1838609..1839481 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| GI529_RS09110 | 1839485..1839859 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GI529_RS09115 | 1839998..1840228 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GI529_RS09120 | 1840330..1840986 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| GI529_RS09125 | 1841010..1841672 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T143222 NZ_CP045977:c1838098-1837995 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT143222 NZ_CP045977:1837957-1838228 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
