Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4493125..4493263 | Replicon | chromosome |
| Accession | NZ_CP045868 | ||
| Organism | Klebsiella aerogenes strain Y6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4493160..4493263 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4493125..4493263 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIY02_RS21435 | 4488234..4490294 | + | 2061 | WP_032708611.1 | oligopeptidase B | - |
| GIY02_RS21440 | 4490297..4490956 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| GIY02_RS21445 | 4491036..4491266 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| GIY02_RS21450 | 4491401..4491775 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| GIY02_RS21455 | 4491779..4492648 | + | 870 | WP_032708610.1 | copper homeostasis membrane protein CopD | - |
| GIY02_RS21460 | 4492662..4493003 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 4493125..4493263 | - | 139 | - | - | Antitoxin |
| - | 4493160..4493263 | + | 104 | - | - | Toxin |
| GIY02_RS21465 | 4493395..4494474 | - | 1080 | WP_032708609.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| GIY02_RS21470 | 4494449..4494721 | - | 273 | WP_071609883.1 | excisionase | - |
| GIY02_RS21475 | 4494788..4495180 | - | 393 | WP_155953466.1 | hypothetical protein | - |
| GIY02_RS21480 | 4495210..4495674 | - | 465 | WP_196776118.1 | siphovirus Gp157 family protein | - |
| GIY02_RS21485 | 4495710..4498046 | - | 2337 | WP_032708604.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4472483..4521663 | 49180 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142917 NZ_CP045868:4493160-4493263 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT142917 NZ_CP045868:c4493263-4493125 [Klebsiella aerogenes]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
