Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3050846..3051049 | Replicon | chromosome |
| Accession | NZ_CP045611 | ||
| Organism | Enterobacter hormaechei strain AUH-ENM30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3050939..3051042 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3050846..3051049 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBT00_RS14420 | 3047383..3048045 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| GBT00_RS14425 | 3048070..3048720 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| GBT00_RS14430 | 3048832..3049062 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GBT00_RS14435 | 3049200..3049571 | + | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| GBT00_RS14440 | 3049573..3050442 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| GBT00_RS14445 | 3050459..3050797 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 3050846..3051049 | - | 204 | - | - | Antitoxin |
| - | 3050939..3051042 | + | 104 | - | - | Toxin |
| GBT00_RS14450 | 3051120..3052205 | - | 1086 | WP_039268953.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| GBT00_RS14455 | 3052174..3052446 | - | 273 | WP_023300430.1 | hypothetical protein | - |
| GBT00_RS14460 | 3052567..3053088 | - | 522 | WP_047725139.1 | hypothetical protein | - |
| GBT00_RS14465 | 3053145..3053360 | - | 216 | WP_053004013.1 | TraR/DksA family transcriptional regulator | - |
| GBT00_RS14470 | 3053452..3053682 | - | 231 | WP_047725137.1 | hypothetical protein | - |
| GBT00_RS14475 | 3053679..3053900 | - | 222 | WP_047725134.1 | hypothetical protein | - |
| GBT00_RS14480 | 3053897..3054115 | - | 219 | WP_047720562.1 | hypothetical protein | - |
| GBT00_RS14485 | 3054125..3054841 | - | 717 | WP_072058660.1 | DNA cytosine methyltransferase | - |
| GBT00_RS14490 | 3054838..3055500 | - | 663 | WP_058663640.1 | DNA methyltransferase | - |
| GBT00_RS14495 | 3055476..3056003 | - | 528 | WP_058663639.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 3030101..3116631 | 86530 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142191 NZ_CP045611:3050939-3051042 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT142191 NZ_CP045611:c3051049-3050846 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
