Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2616279..2616373 Replicon chromosome
Accession NZ_CP045158
Organism Yersinia pestis subsp. pestis bv. Medievalis strain SCPM-O-B-6530

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2616280..2616373 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2616279..2616373 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DJY80_RS12490 2611472..2613550 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
DJY80_RS12495 2613550..2614710 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
DJY80_RS12500 2615242..2615700 + 459 WP_002211098.1 hypothetical protein -
DJY80_RS12505 2615694..2616020 + 327 WP_002211097.1 DUF1493 family protein -
- 2616279..2616373 + 95 - - Antitoxin
- 2616280..2616373 - 94 - - Toxin
DJY80_RS12515 2616543..2616884 - 342 WP_002211095.1 YebY family protein -
DJY80_RS12520 2616981..2617865 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
DJY80_RS12525 2617868..2618254 - 387 WP_002211093.1 CopC domain-containing protein YobA -
DJY80_RS12530 2618660..2619169 - 510 WP_002211092.1 non-heme ferritin -
DJY80_RS12535 2619570..2619800 + 231 WP_140270001.1 DNA polymerase III subunit theta -
DJY80_RS12540 2619860..2620810 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T141333 NZ_CP045158:c2616373-2616280 [Yersinia pestis subsp. pestis bv. Medievalis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT141333 NZ_CP045158:2616279-2616373 [Yersinia pestis subsp. pestis bv. Medievalis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References