Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2204118..2204212 Replicon chromosome
Accession NZ_CP045154
Organism Yersinia pestis strain SCPM-O-B-5935 (I-1996)

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2204118..2204211 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2204118..2204212 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GCK71_RS10405 2199690..2200640 + 951 WP_002211090.1 prolyl aminopeptidase -
GCK71_RS10410 2200700..2200930 - 231 WP_002211091.1 DNA polymerase III subunit theta -
GCK71_RS10415 2201331..2201840 + 510 WP_002211092.1 non-heme ferritin -
GCK71_RS10420 2202237..2202623 + 387 WP_002211093.1 CopC domain-containing protein YobA -
GCK71_RS10425 2202626..2203510 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
GCK71_RS10430 2203607..2203948 + 342 WP_002211095.1 YebY family protein -
- 2204118..2204211 + 94 - - Toxin
- 2204118..2204212 - 95 - - Antitoxin
GCK71_RS10440 2204471..2204797 - 327 WP_002211097.1 DUF1493 family protein -
GCK71_RS10445 2204791..2205249 - 459 WP_002211098.1 hypothetical protein -
GCK71_RS10450 2205781..2206941 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
GCK71_RS10455 2206941..2209019 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T141316 NZ_CP045154:2204118-2204211 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT141316 NZ_CP045154:c2204212-2204118 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References