Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957191..1957462 | Replicon | chromosome |
| Accession | NZ_CP044443 | ||
| Organism | Escherichia coli strain HeN100 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957321..1957424 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957191..1957462 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HeN100_RS11195 | 1953746..1954408 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HeN100_RS11200 | 1954432..1955088 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HeN100_RS11205 | 1955190..1955420 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HeN100_RS11210 | 1955559..1955933 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HeN100_RS11215 | 1955937..1956809 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HeN100_RS11220 | 1956822..1957163 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1957191..1957462 | - | 272 | - | - | Antitoxin |
| - | 1957321..1957424 | + | 104 | - | - | Toxin |
| HeN100_RS11225 | 1957559..1958215 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| HeN100_RS11230 | 1958216..1958407 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HeN100_RS11235 | 1958512..1958748 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HeN100_RS11240 | 1958866..1960305 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140962 NZ_CP044443:1957321-1957424 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140962 NZ_CP044443:c1957462-1957191 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
