Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1021861..1022132 | Replicon | chromosome |
| Accession | NZ_CP044313 | ||
| Organism | Escherichia coli strain RM11911 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1021899..1022002 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1021861..1022132 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7D04_RS05295 | 1019018..1020457 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F7D04_RS05300 | 1020575..1020811 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F7D04_RS05305 | 1020916..1021107 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F7D04_RS05310 | 1021108..1021764 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1021861..1022132 | + | 272 | - | - | Antitoxin |
| - | 1021899..1022002 | - | 104 | - | - | Toxin |
| F7D04_RS05315 | 1022160..1022501 | - | 342 | WP_000976492.1 | YebY family protein | - |
| F7D04_RS05320 | 1022514..1023386 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| F7D04_RS05325 | 1023390..1023764 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| F7D04_RS05330 | 1023903..1024133 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F7D04_RS05335 | 1024235..1024891 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| F7D04_RS05340 | 1024915..1025577 | + | 663 | WP_050939619.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140611 NZ_CP044313:c1022002-1021899 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140611 NZ_CP044313:1021861-1022132 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
