Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 350127..350398 | Replicon | chromosome |
| Accession | NZ_CP044293 | ||
| Organism | Escherichia coli strain P276M | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 350165..350268 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 350127..350398 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6P95_RS01780 | 347284..348723 | + | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F6P95_RS01785 | 348841..349077 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| F6P95_RS01790 | 349182..349373 | + | 192 | WP_001338167.1 | YebW family protein | - |
| F6P95_RS01795 | 349374..350030 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 350127..350398 | + | 272 | - | - | Antitoxin |
| - | 350165..350268 | - | 104 | - | - | Toxin |
| F6P95_RS01800 | 350426..350767 | - | 342 | WP_000976472.1 | YebY family protein | - |
| F6P95_RS01805 | 350780..351652 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| F6P95_RS01810 | 351656..352030 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| F6P95_RS01815 | 352169..352399 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F6P95_RS01820 | 352501..353157 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| F6P95_RS01825 | 353181..353843 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140523 NZ_CP044293:c350268-350165 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140523 NZ_CP044293:350127-350398 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
