Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2260209..2260354 | Replicon | chromosome |
| Accession | NZ_CP044097 | ||
| Organism | Citrobacter koseri strain FDAARGOS_646 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2260216..2260319 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2260209..2260354 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB54_RS10565 | 2255719..2255955 | + | 237 | WP_024130262.1 | DUF1480 family protein | - |
| FOB54_RS10570 | 2256058..2256249 | + | 192 | WP_012132031.1 | YebW family protein | - |
| FOB54_RS10575 | 2256250..2256912 | - | 663 | WP_047464032.1 | protein-serine/threonine phosphatase | - |
| FOB54_RS10580 | 2257160..2259247 | + | 2088 | WP_071259049.1 | TonB-dependent receptor | - |
| FOB54_RS10585 | 2259617..2259808 | + | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| - | 2260209..2260354 | + | 146 | - | - | Antitoxin |
| - | 2260216..2260319 | - | 104 | - | - | Toxin |
| FOB54_RS10590 | 2260475..2260813 | - | 339 | WP_012132024.1 | YebY family protein | - |
| FOB54_RS10595 | 2260830..2261705 | - | 876 | WP_114847796.1 | copper homeostasis membrane protein CopD | - |
| FOB54_RS10600 | 2261705..2262079 | - | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| FOB54_RS10605 | 2262220..2262450 | + | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| FOB54_RS10610 | 2262556..2263212 | + | 657 | WP_114847795.1 | carbon-nitrogen hydrolase family protein | - |
| FOB54_RS10615 | 2263236..2263898 | + | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140045 NZ_CP044097:c2260319-2260216 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT140045 NZ_CP044097:2260209-2260354 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
