Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 739982..740128 | Replicon | chromosome |
| Accession | NZ_CP044083 | ||
| Organism | Klebsiella aerogenes strain FDAARGOS_641 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 740017..740120 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 739982..740128 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB49_RS03610 | 735091..737151 | + | 2061 | WP_015705949.1 | oligopeptidase B | - |
| FOB49_RS03615 | 737154..737813 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| FOB49_RS03620 | 737893..738123 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| FOB49_RS03625 | 738258..738632 | + | 375 | WP_026612268.1 | CopC domain-containing protein YobA | - |
| FOB49_RS03630 | 738636..739505 | + | 870 | WP_015705947.1 | copper homeostasis membrane protein CopD | - |
| FOB49_RS03635 | 739519..739860 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 739982..740128 | - | 147 | - | - | Antitoxin |
| - | 740017..740120 | + | 104 | - | - | Toxin |
| FOB49_RS03640 | 740248..741195 | - | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| FOB49_RS03645 | 741214..743538 | - | 2325 | WP_015705944.1 | fimbrial biogenesis outer membrane usher protein | - |
| FOB49_RS03650 | 743541..744290 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| FOB49_RS03655 | 744308..744826 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140012 NZ_CP044083:740017-740120 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT140012 NZ_CP044083:c740128-739982 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
