Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2121516..2121787 | Replicon | chromosome |
| Accession | NZ_CP043821 | ||
| Organism | Escherichia coli strain RM10740 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2121554..2121657 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2121516..2121787 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1748_RS10455 | 2117897..2119335 | + | 1439 | Protein_2045 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F1748_RS10460 | 2119453..2119689 | + | 237 | WP_001295499.1 | YebV family protein | - |
| F1748_RS10465 | 2119794..2119985 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F1748_RS10475 | 2120775..2121419 | - | 645 | WP_089515817.1 | protein-serine/threonine phosphatase | - |
| - | 2121516..2121787 | + | 272 | - | - | Antitoxin |
| - | 2121554..2121657 | - | 104 | - | - | Toxin |
| F1748_RS10480 | 2121815..2122156 | - | 342 | WP_000976492.1 | YebY family protein | - |
| F1748_RS10485 | 2122169..2123041 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| F1748_RS10490 | 2123045..2123419 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| F1748_RS10495 | 2123558..2123788 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F1748_RS10500 | 2123890..2124546 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| F1748_RS10505 | 2124570..2125232 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2104901..2127289 | 22388 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T139266 NZ_CP043821:c2121657-2121554 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT139266 NZ_CP043821:2121516-2121787 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
