Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4874280..4874489 | Replicon | chromosome |
| Accession | NZ_CP043766 | ||
| Organism | Enterobacter hormaechei strain EB_P9_L5_03.19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4874293..4874396 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4874280..4874489 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1597_RS23705 | 4870534..4871997 | + | 1464 | WP_017693253.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F1597_RS23710 | 4872104..4872343 | + | 240 | WP_003859885.1 | YebV family protein | - |
| F1597_RS23715 | 4872378..4873022 | - | 645 | WP_033486807.1 | protein-serine/threonine phosphatase | - |
| F1597_RS23720 | 4873190..4874169 | + | 980 | Protein_4570 | DUF535 domain-containing protein | - |
| F1597_RS23725 | 4874215..4874412 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 4874280..4874489 | + | 210 | - | - | Antitoxin |
| - | 4874293..4874396 | - | 104 | - | - | Toxin |
| F1597_RS23730 | 4874538..4874876 | - | 339 | WP_033486805.1 | YebY family protein | - |
| F1597_RS23735 | 4874893..4875762 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| F1597_RS23740 | 4875764..4876135 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| F1597_RS23745 | 4876273..4876503 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| F1597_RS23750 | 4876615..4877265 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| F1597_RS23755 | 4877289..4877951 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T139203 NZ_CP043766:c4874396-4874293 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT139203 NZ_CP043766:4874280-4874489 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
