Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2212152..2212420 | Replicon | chromosome |
| Accession | NZ_CP043414 | ||
| Organism | Escherichia coli strain EC42405 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2212279..2212382 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2212152..2212420 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FZN31_RS10485 | 2208705..2209367 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FZN31_RS10490 | 2209391..2210047 | - | 657 | WP_032184416.1 | carbon-nitrogen hydrolase family protein | - |
| FZN31_RS10495 | 2210149..2210379 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FZN31_RS10500 | 2210518..2210892 | + | 375 | WP_000204701.1 | CopC domain-containing protein YobA | - |
| FZN31_RS10505 | 2210896..2211768 | + | 873 | WP_000879324.1 | copper homeostasis membrane protein CopD | - |
| FZN31_RS10510 | 2211781..2212122 | + | 342 | WP_000976467.1 | YebY family protein | - |
| - | 2212152..2212420 | - | 269 | - | - | Antitoxin |
| - | 2212279..2212382 | + | 104 | - | - | Toxin |
| FZN31_RS10515 | 2212517..2213173 | + | 657 | WP_000812737.1 | protein-serine/threonine phosphatase | - |
| FZN31_RS10520 | 2213174..2213365 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FZN31_RS10525 | 2213470..2213706 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FZN31_RS10530 | 2213824..2215263 | - | 1440 | WP_105287968.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138723 NZ_CP043414:2212279-2212382 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT138723 NZ_CP043414:c2212420-2212152 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGATGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGATGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
