Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955316..1955460 | Replicon | chromosome |
| Accession | NZ_CP043342 | ||
| Organism | Enterobacter huaxiensis strain 090008 = WCHEHu090008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1955351..1955455 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955316..1955460 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5067_RS09290 (D5067_0009375) | 1951799..1952461 | - | 663 | WP_119937239.1 | exodeoxyribonuclease X | - |
| D5067_RS09295 (D5067_0009380) | 1952486..1953136 | - | 651 | WP_119937240.1 | carbon-nitrogen hydrolase family protein | - |
| D5067_RS09300 (D5067_0009385) | 1953247..1953477 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| D5067_RS09305 (D5067_0009390) | 1953615..1953986 | + | 372 | WP_119937241.1 | CopC domain-containing protein YobA | - |
| D5067_RS09310 (D5067_0009395) | 1953988..1954857 | + | 870 | WP_119937242.1 | copper homeostasis membrane protein CopD | - |
| D5067_RS09315 (D5067_0009400) | 1954874..1955212 | + | 339 | WP_119937243.1 | YebY family protein | - |
| - | 1955316..1955460 | - | 145 | - | - | Antitoxin |
| - | 1955351..1955455 | + | 105 | - | - | Toxin |
| D5067_RS09320 (D5067_0009410) | 1955620..1956561 | - | 942 | WP_119937244.1 | VirK/YbjX family protein | - |
| D5067_RS09325 (D5067_0009415) | 1956731..1957375 | + | 645 | WP_119937245.1 | protein-serine/threonine phosphatase | - |
| D5067_RS09330 (D5067_0009420) | 1957410..1957649 | - | 240 | WP_119937246.1 | YebV family protein | - |
| D5067_RS09335 (D5067_0009425) | 1957754..1959196 | - | 1443 | WP_210433801.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T138408 NZ_CP043342:1955351-1955455 [Enterobacter huaxiensis]
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT138408 NZ_CP043342:c1955460-1955316 [Enterobacter huaxiensis]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
