Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2056991..2057262 | Replicon | chromosome |
| Accession | NZ_CP043334 | ||
| Organism | Escherichia coli strain WCHEC115106 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2057121..2057224 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2056991..2057262 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FZC46_RS09960 | 2053546..2054208 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FZC46_RS09965 | 2054232..2054888 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FZC46_RS09970 | 2054990..2055220 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FZC46_RS09975 | 2055359..2055733 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FZC46_RS09980 | 2055737..2056609 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FZC46_RS09985 | 2056622..2056963 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2056991..2057262 | - | 272 | - | - | Antitoxin |
| - | 2057121..2057224 | + | 104 | - | - | Toxin |
| FZC46_RS09990 | 2057359..2058015 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FZC46_RS09995 | 2058016..2058207 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FZC46_RS10000 | 2058312..2058548 | - | 237 | WP_001295499.1 | YebV family protein | - |
| FZC46_RS10005 | 2058666..2060105 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138380 NZ_CP043334:2057121-2057224 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT138380 NZ_CP043334:c2057262-2056991 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
