Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3011950..3012093 | Replicon | chromosome |
| Accession | NZ_CP043318 | ||
| Organism | Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3011955..3012058 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3011950..3012093 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY206_RS14600 | 3008211..3009659 | + | 1449 | WP_032641265.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FY206_RS14605 | 3009765..3010004 | + | 240 | WP_008500472.1 | YebV family protein | - |
| FY206_RS14610 | 3010039..3010683 | - | 645 | WP_032641267.1 | protein-serine/threonine phosphatase | - |
| FY206_RS14615 | 3010850..3011812 | + | 963 | WP_032641270.1 | VirK/YbjX family protein | - |
| - | 3011950..3012093 | + | 144 | - | - | Antitoxin |
| - | 3011955..3012058 | - | 104 | - | - | Toxin |
| FY206_RS14620 | 3012197..3012535 | - | 339 | WP_032641272.1 | YebY family protein | - |
| FY206_RS14625 | 3012552..3013421 | - | 870 | WP_032641274.1 | copper homeostasis membrane protein CopD | - |
| FY206_RS14630 | 3013423..3013794 | - | 372 | WP_032641276.1 | CopC domain-containing protein YobA | - |
| FY206_RS14635 | 3013932..3014162 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| FY206_RS14640 | 3014273..3014923 | + | 651 | WP_032641278.1 | carbon-nitrogen hydrolase family protein | - |
| FY206_RS14645 | 3014948..3015610 | + | 663 | WP_032641280.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138342 NZ_CP043318:c3012058-3011955 [Enterobacter chengduensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT138342 NZ_CP043318:3011950-3012093 [Enterobacter chengduensis]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
