Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2870544..2871384 | Replicon | chromosome |
| Accession | NZ_CP043284 | ||
| Organism | Escherichia coli strain WCHEC025985 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | B1LJY4 |
| Locus tag | FYK42_RS14085 | Protein ID | WP_000854686.1 |
| Coordinates | 2870544..2870927 (-) | Length | 128 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A1M0YJ34 |
| Locus tag | FYK42_RS14090 | Protein ID | WP_001360163.1 |
| Coordinates | 2871004..2871384 (-) | Length | 127 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK42_RS14045 (2865546) | 2865546..2866037 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| FYK42_RS14050 (2866139) | 2866139..2866693 | - | 555 | WP_001001902.1 | molecular chaperone YcdY | - |
| FYK42_RS14055 (2866717) | 2866717..2867454 | - | 738 | WP_000283664.1 | zinc-binding phosphatase | - |
| FYK42_RS14060 (2867509) | 2867509..2868447 | - | 939 | WP_000351311.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| FYK42_RS14070 (2868918) | 2868918..2869760 | - | 843 | WP_001274547.1 | DUF4942 domain-containing protein | - |
| FYK42_RS14075 (2869845) | 2869845..2870042 | - | 198 | WP_000839253.1 | DUF957 domain-containing protein | - |
| FYK42_RS14080 (2870059) | 2870059..2870547 | - | 489 | WP_001054233.1 | DUF5983 family protein | - |
| FYK42_RS14085 (2870544) | 2870544..2870927 | - | 384 | WP_000854686.1 | TA system toxin CbtA family protein | Toxin |
| FYK42_RS14090 (2871004) | 2871004..2871384 | - | 381 | WP_001360163.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| FYK42_RS14095 (2871395) | 2871395..2872078 | - | 684 | WP_000086769.1 | hypothetical protein | - |
| FYK42_RS14100 (2872097) | 2872097..2872318 | - | 222 | WP_000692298.1 | DUF987 domain-containing protein | - |
| FYK42_RS14105 (2872381) | 2872381..2872857 | - | 477 | WP_001186726.1 | RadC family protein | - |
| FYK42_RS14110 (2872873) | 2872873..2873319 | - | 447 | WP_241408118.1 | antirestriction protein | - |
| FYK42_RS14115 (2873333) | 2873333..2873769 | - | 437 | Protein_2770 | ESPR-type extended signal peptide-containing protein | - |
| FYK42_RS14120 (2874141) | 2874141..2875013 | - | 873 | WP_063097554.1 | GTPase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | csgB / csgD / csgE / csgF / csgG / wbbN / glf / wbbM / wzt / wzm | 2861928..2910687 | 48759 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 128 a.a. Molecular weight: 14272.28 Da Isoelectric Point: 6.8614
>T138246 WP_000854686.1 NZ_CP043284:c2870927-2870544 [Escherichia coli]
MKTLPDTHVRAASRCPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYVLVRTDQPGF
SAGAPSSQLINSIDILRARRATGLMTRDNYRMVNNITLGKHPEEAKQ
MKTLPDTHVRAASRCPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYVLVRTDQPGF
SAGAPSSQLINSIDILRARRATGLMTRDNYRMVNNITLGKHPEEAKQ
Download Length: 384 bp
>T138246 NZ_CP057481:c3571492-3571085 [Escherichia fergusonii]
GTGGTCCTGTGGCAATCTGATTTACGCGTCTCCTGGCGCGCGCAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCGTTAAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGACGCATTAATGCTCGCCAGGGGGAAATTCGCCTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGTGCATCGTCAAAGCGCCGTGGATGATTAAAAGCGGCATGATGTTGCGTTTACGTTCTGATAGCGGTAAACGTCA
GCACCTGTGGCTGGCAGCCGACAGCATGGACGAAGCAGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
GTGGTCCTGTGGCAATCTGATTTACGCGTCTCCTGGCGCGCGCAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCGTTAAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGACGCATTAATGCTCGCCAGGGGGAAATTCGCCTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGTGCATCGTCAAAGCGCCGTGGATGATTAAAAGCGGCATGATGTTGCGTTTACGTTCTGATAGCGGTAAACGTCA
GCACCTGTGGCTGGCAGCCGACAGCATGGACGAAGCAGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
Antitoxin
Download Length: 127 a.a. Molecular weight: 13950.74 Da Isoelectric Point: 5.0823
>AT138246 WP_001360163.1 NZ_CP043284:c2871384-2871004 [Escherichia coli]
VSDTLPGTTLPDDNKDRPWWGLPCIVTPCFGARLVQEGNRLHYLADRAGIRGRFSNADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCDADTLGSCGYVYLAVYPATETESNPPE
VSDTLPGTTLPDDNKDRPWWGLPCIVTPCFGARLVQEGNRLHYLADRAGIRGRFSNADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCDADTLGSCGYVYLAVYPATETESNPPE
Download Length: 381 bp
>AT138246 NZ_CP057481:c3571739-3571473 [Escherichia fergusonii]
ATGGACATTAATAACAAAGCCCGCATTCACTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGTGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCCGATC
TGTTCAACTGGCTGATGAATCATGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAATAACAAAGCCCGCATTCACTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGTGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCCGATC
TGTTCAACTGGCTGATGAATCATGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|