Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2957661..2957932 | Replicon | chromosome |
| Accession | NZ_CP043199 | ||
| Organism | Escherichia coli O16:H48 strain PG20180060 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2957699..2957802 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2957661..2957932 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA11_RS14465 | 2954818..2956257 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FYA11_RS14470 | 2956375..2956611 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FYA11_RS14475 | 2956716..2956907 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FYA11_RS14480 | 2956908..2957564 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2957661..2957932 | + | 272 | - | - | Antitoxin |
| - | 2957699..2957802 | - | 104 | - | - | Toxin |
| FYA11_RS14485 | 2957960..2958301 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FYA11_RS14490 | 2958314..2959186 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FYA11_RS14495 | 2959190..2959564 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FYA11_RS14500 | 2959703..2959933 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FYA11_RS14505 | 2960035..2960691 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FYA11_RS14510 | 2960715..2961377 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137673 NZ_CP043199:c2957802-2957699 [Escherichia coli O16:H48]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT137673 NZ_CP043199:2957661-2957932 [Escherichia coli O16:H48]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
