Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2248049..2248320 | Replicon | chromosome |
| Accession | NZ_CP043195 | ||
| Organism | Escherichia coli O16:H48 strain PG20180062 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2248179..2248282 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2248049..2248320 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA13_RS10725 | 2244604..2245266 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FYA13_RS10730 | 2245290..2245946 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FYA13_RS10735 | 2246048..2246278 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FYA13_RS10740 | 2246417..2246791 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FYA13_RS10745 | 2246795..2247667 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FYA13_RS10750 | 2247680..2248021 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2248049..2248320 | - | 272 | - | - | Antitoxin |
| - | 2248179..2248282 | + | 104 | - | - | Toxin |
| FYA13_RS10755 | 2248417..2249073 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FYA13_RS10760 | 2249074..2249265 | - | 192 | WP_000457842.1 | YebW family protein | - |
| FYA13_RS10765 | 2249370..2249606 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FYA13_RS10770 | 2249724..2251163 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137594 NZ_CP043195:2248179-2248282 [Escherichia coli O16:H48]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT137594 NZ_CP043195:c2248320-2248049 [Escherichia coli O16:H48]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
