Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3291920..3292187 | Replicon | chromosome |
| Accession | NZ_CP042942 | ||
| Organism | Escherichia fergusonii strain ATCC 35473 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3292046..3292149 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3291920..3292187 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FV158_RS15860 | 3288470..3289132 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| FV158_RS15865 | 3289156..3289812 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| FV158_RS15870 | 3289919..3290149 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| FV158_RS15875 | 3290288..3290662 | + | 375 | WP_148048304.1 | CopC domain-containing protein YobA | - |
| FV158_RS15880 | 3290665..3291537 | + | 873 | WP_000928495.1 | copper homeostasis membrane protein CopD | - |
| FV158_RS15885 | 3291549..3291890 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 3291920..3292187 | - | 268 | - | - | Antitoxin |
| - | 3292046..3292149 | + | 104 | - | - | Toxin |
| FV158_RS15890 | 3292283..3292939 | + | 657 | WP_148048305.1 | protein-serine/threonine phosphatase | - |
| FV158_RS15895 | 3292940..3293131 | - | 192 | WP_002431587.1 | YebW family protein | - |
| FV158_RS15900 | 3293236..3293472 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FV158_RS15905 | 3293590..3295029 | - | 1440 | WP_148048306.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136673 NZ_CP042942:3292046-3292149 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT136673 NZ_CP042942:c3292187-3291920 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
