Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3554847..3555679 | Replicon | chromosome |
| Accession | NZ_CP042892 | ||
| Organism | Escherichia coli O10:H32 strain NMBU-W12E19 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | FVP48_RS19685 | Protein ID | WP_151325525.1 |
| Coordinates | 3554847..3555221 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | E3PJ72 |
| Locus tag | FVP48_RS19690 | Protein ID | WP_001278232.1 |
| Coordinates | 3555311..3555679 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVP48_RS19650 | 3549914..3550513 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| FVP48_RS19655 | 3550516..3551493 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| FVP48_RS19660 | 3551490..3552668 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| FVP48_RS19665 | 3552670..3553206 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| FVP48_RS19670 | 3553487..3554056 | - | 570 | WP_001290247.1 | DUF4942 domain-containing protein | - |
| FVP48_RS19675 | 3554153..3554350 | - | 198 | WP_000839281.1 | DUF957 domain-containing protein | - |
| FVP48_RS19680 | 3554362..3554850 | - | 489 | WP_000777547.1 | hypothetical protein | - |
| FVP48_RS19685 | 3554847..3555221 | - | 375 | WP_151325525.1 | TA system toxin CbtA family protein | Toxin |
| FVP48_RS19690 | 3555311..3555679 | - | 369 | WP_001278232.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| FVP48_RS19695 | 3555842..3556063 | - | 222 | WP_000692329.1 | DUF987 domain-containing protein | - |
| FVP48_RS19700 | 3556126..3556602 | - | 477 | WP_001186726.1 | RadC family protein | - |
| FVP48_RS19705 | 3556618..3557103 | - | 486 | WP_000849565.1 | antirestriction protein | - |
| FVP48_RS19710 | 3557158..3557976 | - | 819 | WP_001234620.1 | DUF945 domain-containing protein | - |
| FVP48_RS19715 | 3558076..3558309 | - | 234 | WP_001119729.1 | DUF905 family protein | - |
| FVP48_RS19720 | 3558388..3558843 | - | 456 | WP_000581504.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14019.03 Da Isoelectric Point: 8.2905
>T136445 WP_151325525.1 NZ_CP042892:c3555221-3554847 [Escherichia coli O10:H32]
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTINNITLGKHPEKR
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTINNITLGKHPEKR
Download Length: 375 bp
>T136445 NZ_CP042892:c3555221-3554847 [Escherichia coli O10:H32]
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGAGCTGCCCGTCTCCCGTCACCATCTGGCAGACTCTGCTCTC
CCGACTACTGGGCCAGCATTACGGCCTTACACTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACTTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGATAAATAACATTACCCTGGGTAAGCATCCGGAGAAACGATGA
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGAGCTGCCCGTCTCCCGTCACCATCTGGCAGACTCTGCTCTC
CCGACTACTGGGCCAGCATTACGGCCTTACACTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACTTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGATAAATAACATTACCCTGGGTAAGCATCCGGAGAAACGATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13491.37 Da Isoelectric Point: 6.6290
>AT136445 WP_001278232.1 NZ_CP042892:c3555679-3555311 [Escherichia coli O10:H32]
VSDALSGTMLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
VSDALSGTMLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
Download Length: 369 bp
>AT136445 NZ_CP042892:c3555679-3555311 [Escherichia coli O10:H32]
GTGTCAGACGCACTCTCCGGGACAATGCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGTCTGACCTGCAAAGCTGACACTCTCGGTAGCGG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACGCACTCTCCGGGACAATGCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGTCTGACCTGCAAAGCTGACACTCTCGGTAGCGG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|