Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2632555..2632826 | Replicon | chromosome |
| Accession | NZ_CP042843 | ||
| Organism | Escherichia coli strain JME67 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2632593..2632696 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2632555..2632826 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVE23_RS12880 | 2629712..2631151 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FVE23_RS12885 | 2631269..2631505 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FVE23_RS12890 | 2631610..2631801 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FVE23_RS12895 | 2631802..2632458 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2632555..2632826 | + | 272 | - | - | Antitoxin |
| - | 2632593..2632696 | - | 104 | - | - | Toxin |
| FVE23_RS12900 | 2632854..2633195 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FVE23_RS12905 | 2633208..2634080 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FVE23_RS12910 | 2634084..2634458 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FVE23_RS12915 | 2634597..2634827 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FVE23_RS12920 | 2634929..2635585 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FVE23_RS12925 | 2635609..2636271 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136092 NZ_CP042843:c2632696-2632593 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136092 NZ_CP042843:2632555-2632826 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
