Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2830517..2830720 | Replicon | chromosome |
| Accession | NZ_CP042488 | ||
| Organism | Enterobacter hormaechei strain C15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2830524..2830627 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2830517..2830720 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR808_RS13710 | 2825906..2826586 | + | 681 | WP_022651073.1 | YqaJ viral recombinase family protein | - |
| FR808_RS13715 | 2826583..2827011 | + | 429 | WP_022651072.1 | hypothetical protein | - |
| FR808_RS13720 | 2827008..2827160 | + | 153 | WP_022651071.1 | DUF1317 family protein | - |
| FR808_RS13725 | 2827157..2827708 | + | 552 | WP_022651070.1 | phage N-6-adenine-methyltransferase | - |
| FR808_RS13730 | 2827705..2827923 | + | 219 | WP_032621601.1 | hypothetical protein | - |
| FR808_RS13740 | 2828242..2828460 | + | 219 | WP_058656544.1 | TraR/DksA family transcriptional regulator | - |
| FR808_RS13745 | 2828460..2828699 | + | 240 | WP_058656543.1 | DUF4222 domain-containing protein | - |
| FR808_RS13750 | 2828705..2828917 | - | 213 | WP_045617122.1 | hypothetical protein | - |
| FR808_RS13755 | 2829120..2829392 | + | 273 | WP_023300430.1 | hypothetical protein | - |
| FR808_RS13760 | 2829361..2830446 | + | 1086 | WP_058691373.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2830517..2830720 | + | 204 | - | - | Antitoxin |
| - | 2830524..2830627 | - | 104 | - | - | Toxin |
| FR808_RS13765 | 2830769..2831107 | - | 339 | WP_003859787.1 | YebY family protein | - |
| FR808_RS13770 | 2831124..2831993 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| FR808_RS13775 | 2831995..2832366 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| FR808_RS13780 | 2832504..2832734 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FR808_RS13785 | 2832846..2833496 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| FR808_RS13790 | 2833521..2834183 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2765612..2836966 | 71354 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135715 NZ_CP042488:c2830627-2830524 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT135715 NZ_CP042488:2830517-2830720 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
