Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1996809..1996957 | Replicon | chromosome |
| Accession | NZ_CP042363 | ||
| Organism | Serratia plymuthica strain A294 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1996853..1996949 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1996809..1996957 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FS592_RS09440 (FS592_09495) | 1992025..1992450 | + | 426 | WP_004943113.1 | TraR/DksA C4-type zinc finger protein | - |
| FS592_RS09445 (FS592_09500) | 1992619..1993572 | + | 954 | WP_006324738.1 | prolyl aminopeptidase | - |
| FS592_RS09450 (FS592_09505) | 1993603..1993833 | - | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| FS592_RS09455 (FS592_09510) | 1994208..1994726 | + | 519 | WP_004943119.1 | non-heme ferritin | - |
| FS592_RS09460 (FS592_09515) | 1995032..1995415 | + | 384 | WP_004943122.1 | CopC domain-containing protein YobA | - |
| FS592_RS09465 (FS592_09520) | 1995419..1996300 | + | 882 | WP_006324741.1 | copper homeostasis membrane protein CopD | - |
| FS592_RS09470 (FS592_09525) | 1996370..1996711 | + | 342 | WP_004943126.1 | YebY family protein | - |
| - | 1996809..1996957 | - | 149 | - | - | Antitoxin |
| - | 1996853..1996949 | + | 97 | - | - | Toxin |
| FS592_RS09475 (FS592_09530) | 1997028..1997234 | - | 207 | Protein_1830 | tyrosine-type recombinase/integrase | - |
| FS592_RS09480 (FS592_09535) | 1997365..1998099 | + | 735 | WP_006324742.1 | response regulator transcription factor | - |
| FS592_RS09485 (FS592_09540) | 1998096..1999460 | + | 1365 | WP_020438854.1 | ATP-binding protein | - |
| FS592_RS09490 (FS592_09545) | 1999457..2001409 | - | 1953 | WP_006324744.1 | TonB-dependent receptor | - |
| FS592_RS09495 (FS592_09550) | 2001625..2001738 | + | 114 | Protein_1834 | IS1-like element transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T135611 NZ_CP042363:1996853-1996949 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT135611 NZ_CP042363:c1996957-1996809 [Serratia plymuthica]
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
