Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 297809..298328 | Replicon | chromosome |
| Accession | NZ_CP042344 | ||
| Organism | Comamonas sp. NLF-7-7 strain NLF 7-7 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | FOZ74_RS01505 | Protein ID | WP_146911353.1 |
| Coordinates | 298047..298328 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | FOZ74_RS01500 | Protein ID | WP_146911352.1 |
| Coordinates | 297809..298057 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOZ74_RS01450 | 292979..293479 | - | 501 | WP_146914031.1 | pilin | - |
| FOZ74_RS01455 | 293758..294315 | + | 558 | WP_146911340.1 | hypothetical protein | - |
| FOZ74_RS01460 | 294516..294905 | + | 390 | WP_146911342.1 | transcriptional regulator | - |
| FOZ74_RS01465 | 295000..295281 | + | 282 | WP_146911344.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FOZ74_RS01470 | 295307..295615 | + | 309 | WP_146911346.1 | HigA family addiction module antidote protein | - |
| FOZ74_RS01475 | 295783..296202 | - | 420 | WP_146911347.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
| FOZ74_RS01480 | 296204..296350 | - | 147 | WP_146911348.1 | type II toxin-antitoxin system MqsR family toxin | - |
| FOZ74_RS01485 | 296430..296750 | - | 321 | WP_146911350.1 | DNA-binding transcriptional regulator | - |
| FOZ74_RS01490 | 296747..297118 | - | 372 | Protein_283 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FOZ74_RS01495 | 297252..297611 | + | 360 | Protein_284 | PIN domain-containing protein | - |
| FOZ74_RS01500 | 297809..298057 | + | 249 | WP_146911352.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| FOZ74_RS01505 | 298047..298328 | + | 282 | WP_146911353.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| FOZ74_RS01510 | 298546..299022 | - | 477 | WP_146911355.1 | phage virion morphogenesis protein | - |
| FOZ74_RS01515 | 299156..300082 | - | 927 | WP_146911357.1 | hypothetical protein | - |
| FOZ74_RS01520 | 300082..300390 | - | 309 | WP_146911358.1 | HigA family addiction module antidote protein | - |
| FOZ74_RS01525 | 300400..300513 | - | 114 | WP_146911360.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FOZ74_RS01530 | 300510..301829 | - | 1320 | WP_146911361.1 | histidinol dehydrogenase | - |
| FOZ74_RS01535 | 301826..302110 | - | 285 | WP_146911363.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| FOZ74_RS01540 | 302217..302867 | - | 651 | WP_146911365.1 | ATP phosphoribosyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 289863..298328 | 8465 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10695.50 Da Isoelectric Point: 10.7882
>T135448 WP_146911353.1 NZ_CP042344:298047-298328 [Comamonas sp. NLF-7-7]
MPFELRFKRLALDEWQRLDGSVRAQFKKELAERLQHPRMPSAKLSGHADRYKIKLRALGYRLVYEVRDTELVVVVIAVGK
RDGNAVYAVAAGR
MPFELRFKRLALDEWQRLDGSVRAQFKKELAERLQHPRMPSAKLSGHADRYKIKLRALGYRLVYEVRDTELVVVVIAVGK
RDGNAVYAVAAGR
Download Length: 282 bp
>T135448 NZ_CP042344:298047-298328 [Comamonas sp. NLF-7-7]
ATGCCCTTTGAACTGCGCTTCAAGCGGCTTGCGCTGGACGAATGGCAGCGGCTGGATGGGTCGGTTCGCGCCCAATTCAA
GAAAGAGCTTGCAGAGCGCCTGCAACATCCGCGAATGCCGTCGGCCAAATTGTCAGGGCATGCCGACCGCTACAAGATCA
AGCTGCGTGCGCTGGGCTACCGCTTGGTTTATGAGGTGCGGGATACGGAGCTGGTAGTGGTAGTCATCGCAGTGGGCAAG
CGTGACGGCAATGCGGTTTATGCCGTGGCGGCGGGGCGTTAG
ATGCCCTTTGAACTGCGCTTCAAGCGGCTTGCGCTGGACGAATGGCAGCGGCTGGATGGGTCGGTTCGCGCCCAATTCAA
GAAAGAGCTTGCAGAGCGCCTGCAACATCCGCGAATGCCGTCGGCCAAATTGTCAGGGCATGCCGACCGCTACAAGATCA
AGCTGCGTGCGCTGGGCTACCGCTTGGTTTATGAGGTGCGGGATACGGAGCTGGTAGTGGTAGTCATCGCAGTGGGCAAG
CGTGACGGCAATGCGGTTTATGCCGTGGCGGCGGGGCGTTAG
Antitoxin
Download Length: 83 a.a. Molecular weight: 8740.14 Da Isoelectric Point: 4.4000
>AT135448 WP_146911352.1 NZ_CP042344:297809-298057 [Comamonas sp. NLF-7-7]
MAHKILAPMAASVTELKRDPMGTVLAAEGSAVAILNRNEPAFYCVPAKAFEALMEKLEDLELNAIANARADDKEVAVTLD
AL
MAHKILAPMAASVTELKRDPMGTVLAAEGSAVAILNRNEPAFYCVPAKAFEALMEKLEDLELNAIANARADDKEVAVTLD
AL
Download Length: 249 bp
>AT135448 NZ_CP042344:297809-298057 [Comamonas sp. NLF-7-7]
ATGGCACACAAGATACTCGCACCGATGGCCGCCAGCGTCACCGAGCTCAAGCGCGACCCCATGGGTACGGTGCTTGCCGC
CGAGGGGAGTGCCGTGGCTATTCTGAATCGCAATGAACCGGCGTTCTATTGCGTGCCTGCCAAGGCATTTGAGGCCTTGA
TGGAGAAGCTGGAAGATCTGGAGCTCAACGCCATTGCCAACGCACGCGCTGACGACAAGGAAGTGGCGGTGACTCTGGAT
GCCCTTTGA
ATGGCACACAAGATACTCGCACCGATGGCCGCCAGCGTCACCGAGCTCAAGCGCGACCCCATGGGTACGGTGCTTGCCGC
CGAGGGGAGTGCCGTGGCTATTCTGAATCGCAATGAACCGGCGTTCTATTGCGTGCCTGCCAAGGCATTTGAGGCCTTGA
TGGAGAAGCTGGAAGATCTGGAGCTCAACGCCATTGCCAACGCACGCGCTGACGACAAGGAAGTGGCGGTGACTCTGGAT
GCCCTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|