Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1046951..1047222 | Replicon | chromosome |
| Accession | NZ_CP042336 | ||
| Organism | Escherichia coli strain GZ04-0086 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1046989..1047092 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1046951..1047222 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3B71_RS07140 | 1044108..1045547 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E3B71_RS07145 | 1045665..1045901 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3B71_RS07150 | 1046006..1046197 | + | 192 | WP_000457842.1 | YebW family protein | - |
| E3B71_RS07155 | 1046198..1046854 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1046951..1047222 | + | 272 | - | - | Antitoxin |
| - | 1046989..1047092 | - | 104 | - | - | Toxin |
| E3B71_RS07160 | 1047250..1047591 | - | 342 | WP_000976476.1 | YebY family protein | - |
| E3B71_RS07165 | 1047604..1048476 | - | 873 | WP_046464082.1 | copper homeostasis membrane protein CopD | - |
| E3B71_RS07170 | 1048480..1048854 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E3B71_RS07175 | 1048993..1049223 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3B71_RS07180 | 1049325..1049981 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| E3B71_RS07185 | 1050005..1050667 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135408 NZ_CP042336:c1047092-1046989 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT135408 NZ_CP042336:1046951-1047222 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
