Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4485798..4485943 | Replicon | chromosome |
| Accession | NZ_CP042320 | ||
| Organism | Klebsiella pneumoniae strain 5-16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4485805..4485907 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4485798..4485943 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLM25_RS22150 | 4481330..4482763 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FLM25_RS22155 | 4482879..4483118 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FLM25_RS22160 | 4483216..4483407 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FLM25_RS22165 | 4483404..4484057 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| FLM25_RS22170 | 4484214..4485182 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FLM25_RS22175 | 4485287..4485430 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4485798..4485943 | + | 146 | - | - | Antitoxin |
| - | 4485805..4485907 | - | 103 | - | - | Toxin |
| FLM25_RS22180 | 4486066..4486404 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FLM25_RS22185 | 4486421..4487290 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| FLM25_RS22190 | 4487294..4487668 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FLM25_RS22195 | 4487781..4488011 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FLM25_RS22200 | 4488090..4488749 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FLM25_RS22205 | 4488753..4490813 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135366 NZ_CP042320:c4485907-4485805 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT135366 NZ_CP042320:4485798-4485943 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
