Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2763590..2763821 | Replicon | chromosome |
| Accession | NZ_CP042250 | ||
| Organism | Escherichia coli strain BCE049 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2763591..2763693 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2763590..2763821 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQU84_RS15600 | 2760502..2761590 | + | 1089 | WP_047088016.1 | recombinase RecT | - |
| FQU84_RS15605 | 2761654..2761848 | + | 195 | WP_021500490.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| FQU84_RS15610 | 2761841..2762029 | + | 189 | WP_047087971.1 | DUF1187 family protein | - |
| - | 2761847..2762025 | - | 179 | NuclAT_0 | - | - |
| - | 2761847..2762025 | - | 179 | NuclAT_0 | - | - |
| - | 2761847..2762025 | - | 179 | NuclAT_0 | - | - |
| - | 2761847..2762025 | - | 179 | NuclAT_0 | - | - |
| FQU84_RS15615 | 2762136..2762417 | + | 282 | WP_001311878.1 | excisionase | - |
| FQU84_RS15620 | 2762383..2763459 | + | 1077 | WP_047087972.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2763590..2763821 | + | 232 | - | - | Antitoxin |
| - | 2763591..2763693 | - | 103 | - | - | Toxin |
| FQU84_RS15625 | 2763851..2764192 | - | 342 | WP_000984819.1 | YebY family protein | - |
| FQU84_RS15630 | 2764205..2765077 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| FQU84_RS15635 | 2765081..2765455 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FQU84_RS15640 | 2765594..2765824 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FQU84_RS15645 | 2765926..2766582 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| FQU84_RS15650 | 2766605..2767267 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2704956..2785911 | 80955 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135091 NZ_CP042250:c2763693-2763591 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT135091 NZ_CP042250:2763590-2763821 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
